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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34190566_34190637_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34190566 - 34190637
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCATGC
Flanking Amino Acid:
SDVPTSDLESSTSGSDSSVS
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.9
40.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78.7
0.65
0.8
73.5
30.3
Minor 5ss
34.4
-1.8
3
45.5
42.5
Minor BPS
49.7
-0
2.1
66.27
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030299
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041425
34189896 - 34194333
4438
ENSAPLT00000027032
34189896 - 34194333
4438