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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34201065_34201772_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34201065 - 34201772
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTCACCT
Flanking Amino Acid:
QHDLSTAAVAGSSTPEEMVA
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.1
0.63
0.8
72.5
32.4
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
54.8
0.23
1.8
76.21
40.7

Associated Gene:

Gene:
NUP160
Ensembl Gene ID:
ENSAPLG00000015048
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015795
34200546 - 34226056
25511