Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34201884_34202646_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34201884 - 34202646

Intron Length:

763

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTGCC

5'SS Class:

major

3'SS Sequence:

CCATCTGTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TCTTGTCCATCT

Flanking Amino Acid:

SHDGEYTAVPTTRQIEILEL

Intron Amino Acid Position:

1062

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

68.5

38.3

Major BPS

84.4

0.85

34.5

Major PPT

74.6

0.55

0.9

68.3

37.1

Minor 5ss

36.1

-1.6

3.2

50.7

39.7

Minor BPS

41.3

-0.5

2.3

64.33

46.2

Associated Gene:

Gene:

NUP160

Ensembl Gene ID:

ENSAPLG00000015048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015795

34200546 - 34226056

25511