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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34204260_34205024_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34204260 - 34205024
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAGAA
U12 Branch Point Sequence:
TCTTCCAGAAGG
Flanking Amino Acid:
VALTQNPDPSRQLDCLRQLV
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
33.8
Major BPS
52.4
0.06
1.1
48.9
36.6
Major PPT
78.7
0.65
0.8
73.3
31.6
Minor 5ss
26.1
-2.7
3.2
33.4
42.6
Minor BPS
48.7
-0.2
2.1
61.19
46.2

Associated Gene:

Gene:
NUP160
Ensembl Gene ID:
ENSAPLG00000015048
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015795
34200546 - 34226056
25511