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Intron Name: Anas_platyrhynchos_platyrhynchos_5_34206563_34211840_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34206563 - 34211840

Intron Length:

5278

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACTGAA

U12 Branch Point Sequence:

GGTGACTGAAGC

Flanking Amino Acid:

MGSCQYTQLQEYIRLLQPWC

Intron Amino Acid Position:

784

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

56.6

0.16

1.2

49.3

Major PPT

82.7

0.74

0.7

77.1

24.9

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

44.8

-0.4

54.01

43.1

Associated Gene:

Gene:

NUP160

Ensembl Gene ID:

ENSAPLG00000015048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043415

34201916 - 34226021

24106

ENSAPLT00000015795

34200546 - 34226056

25511