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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34212578_34213932_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34212578 - 34213932
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGCTTCTGAACT
Flanking Amino Acid:
DTTALTTHKLVSSPQTIVEL
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.8
0.51
0.9
69.7
41
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
69.7
0.7
1.4
81.31
40.1

Associated Gene:

Gene:
NUP160
Ensembl Gene ID:
ENSAPLG00000015048
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015795
34200546 - 34226056
25511
ENSAPLT00000043415
34201916 - 34226021
24106