Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34220034_34220494_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34220034 - 34220494

Intron Length:

461

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCTGG

5'SS Class:

major

3'SS Sequence:

GTTTTCTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTAAAT

U12 Branch Point Sequence:

GTTTTCTTGACA

Flanking Amino Acid:

VTVRHDQDPRETYLEYLFMP

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

56.7

Major BPS

58.4

0.21

1.2

38.7

Major PPT

79.8

0.67

76.3

37.8

Minor 5ss

37.4

-1.4

38.2

46.7

Minor BPS

79.3

0.92

82.87

Associated Gene:

Gene:

NUP160

Ensembl Gene ID:

ENSAPLG00000015048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043415

34201916 - 34226021

24106

ENSAPLT00000015795

34200546 - 34226056

25511