Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34220580_34221318_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34220580 - 34221318

Intron Length:

739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTTTC

5'SS Class:

major

3'SS Sequence:

TTGTAATTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

GTTCTTGTAATT

Flanking Amino Acid:

QTVVKYINFEQNVAGQWNQV

Intron Amino Acid Position:

321

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

72.4

33.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

74.9

0.56

66.2

Minor 5ss

41.5

-0.9

58.2

40.5

Minor BPS

51.6

0.13

73.2

38.3

Associated Gene:

Gene:

NUP160

Ensembl Gene ID:

ENSAPLG00000015048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043415

34201916 - 34226021

24106

ENSAPLT00000015795

34200546 - 34226056

25511