Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34221707_34222652_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34221707 - 34222652

Intron Length:

946

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGAGC

5'SS Class:

strong_major

3'SS Sequence:

GGCGTGTTTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCAAAA

U12 Branch Point Sequence:

AATGGCTTACGA

Flanking Amino Acid:

VYMHAPKRGQFCVFQLVSTE

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.5

41.1

Major BPS

47.7

-0.1

Major PPT

64.8

0.33

57.4

43.2

Minor 5ss

38.7

-1.3

3.1

51.6

45.2

Minor BPS

43.1

-0.5

2.3

54.23

44.5

Associated Gene:

Gene:

NUP160

Ensembl Gene ID:

ENSAPLG00000015048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043415

34201916 - 34226021

24106

ENSAPLT00000015795

34200546 - 34226056

25511