Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34222812_34223461_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34222812 - 34223461

Intron Length:

650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTTAC

U12 Branch Point Sequence:

GTGGGGTTACGT

Flanking Amino Acid:

DHKLRMWSYKDQMCLMVADL

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.5

32.9

Major BPS

45.4

-0.2

1.4

34.8

43.5

Major PPT

75.4

0.57

0.9

69.9

36.6

Minor 5ss

26.6

-2.7

30.5

43.3

Minor BPS

-1

2.6

51.35

Associated Gene:

Gene:

NUP160

Ensembl Gene ID:

ENSAPLG00000015048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043415

34201916 - 34226021

24106

ENSAPLT00000015795

34200546 - 34226056

25511