Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34224743_34225811_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34224743 - 34225811

Intron Length:

1069

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTGAGTACT

5'SS Class:

major

3'SS Sequence:

TTCCCTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTCAA

U12 Branch Point Sequence:

CAAGGCTTACTC

Flanking Amino Acid:

LPHPACSYRSELLMESQIQS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.3

0.41

1.3

71.4

40.3

Major BPS

65.8

0.39

1.1

69.2

36.3

Major PPT

83.5

0.75

0.7

81.1

24.1

Minor 5ss

33.9

-1.8

2.7

39.4

38.9

Minor BPS

43.3

-0.5

47.48

42.6

Associated Gene:

Gene:

NUP160

Ensembl Gene ID:

ENSAPLG00000015048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043415

34201916 - 34226021

24106

ENSAPLT00000015795

34200546 - 34226056

25511