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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34239232_34239371_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34239232 - 34239371
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCC
5'SS Class:
major
3'SS Sequence:
GCTCTGACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCTGCTCTGACC
Flanking Amino Acid:
YKKKKHVFTLRLSNGSEWLF
Intron Amino Acid Position:
2233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
63.1
41.4
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
64.8
0.33
1
54.6
40.2
Minor 5ss
38.1
-1.3
3.2
51.2
45.5
Minor BPS
52.5
0.06
1.8
65.93
40.4

Associated Gene:

Gene:
SPTB
Ensembl Gene ID:
ENSAPLG00000015736
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016431
34238106 - 34252019
13914
ENSAPLT00000042689
34238106 - 34252019
13914
ENSAPLT00000022746
34238106 - 34252019
13914