Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34239546_34239621_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34239546 - 34239621

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCACG

5'SS Class:

major

3'SS Sequence:

GGGCTGCCCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CAGTGAC

U12 Branch Point Sequence:

CTGGCAGTGACG

Flanking Amino Acid:

LEAATKRASNRSWSTRYCVL

Intron Amino Acid Position:

2175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

66.3

45.2

Major BPS

51.2

0.03

1.2

44.4

38.7

Major PPT

58.9

0.2

50.4

39.3

Minor 5ss

38.3

-1.3

3.1

Minor BPS

41.3

-0.8

2.3

46.95

46.4

Associated Gene:

Gene:

SPTB

Ensembl Gene ID:

ENSAPLG00000015736

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022746

34238106 - 34252019

13914

ENSAPLT00000016431

34238106 - 34252019

13914