Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34239765_34240617_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34239765 - 34240617

Intron Length:

853

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATTGCCC

5'SS Class:

weak_major

3'SS Sequence:

TGCTTCGTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

CGGGCTGTGACG

Flanking Amino Acid:

GHPAGRRHPTGRPRARRSRQ

Intron Amino Acid Position:

2320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.5

0.23

1.1

46.8

41.5

Major BPS

0.22

1.2

52.4

43.3

Major PPT

68.9

0.43

1.1

41.2

Minor 5ss

37.7

-1.4

3.2

43.2

Minor BPS

42.1

-0.7

2.1

41.97

43.8

Associated Gene:

Gene:

SPTB

Ensembl Gene ID:

ENSAPLG00000015736

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022746

34238106 - 34252019

13914

ENSAPLT00000042689

34238106 - 34252019

13914