Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34241196_34241547_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34241196 - 34241547

Intron Length:

352

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTCAGTTCT

5'SS Class:

major

3'SS Sequence:

CACCCCGGAGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCAAAT

U12 Branch Point Sequence:

AAATTCGGAGCT

Flanking Amino Acid:

SPPTTDGLQPAGPQRRLSQE

Intron Amino Acid Position:

2128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

1.3

72.7

39.4

Major BPS

47.8

-0.1

1.3

41.4

Major PPT

52.2

0.05

46.5

34.9

Minor 5ss

38.7

-1.3

2.8

52.5

43.9

Minor BPS

43.1

-0.4

2.2

61.28

Associated Gene:

Gene:

SPTB

Ensembl Gene ID:

ENSAPLG00000015736

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042689

34238106 - 34252019

13914

ENSAPLT00000023092

34236896 - 34252019

15124

ENSAPLT00000022746

34238106 - 34252019

13914