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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34241861_34241948_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34241861 - 34241948
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
CCTTCCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGCAT
U12 Branch Point Sequence:
GTCCCCCCAACA
Flanking Amino Acid:
RIAALRKLTTLELLGGRTLR
Intron Amino Acid Position:
2069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
50.1
0
1.4
63
43.2
Major PPT
73.1
0.52
0.9
69
31.5
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
49.1
-0
1.9
63.2
42.3

Associated Gene:

Gene:
SPTB
Ensembl Gene ID:
ENSAPLG00000015736
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016431
34238106 - 34252019
13914
ENSAPLT00000043960
34241335 - 34255348
14014
ENSAPLT00000042689
34238106 - 34252019
13914
ENSAPLT00000023092
34236896 - 34252019
15124
ENSAPLT00000022746
34238106 - 34252019
13914