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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34242611_34242693_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34242611 - 34242693
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGACA
5'SS Class:
major
3'SS Sequence:
CCGCCCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TCCCTGGTGACA
Flanking Amino Acid:
LQRKHQESPEIKAKLMELLD
Intron Amino Acid Position:
1975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
38.2
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
74.9
0.56
0.8
68.2
31.9
Minor 5ss
25.7
-2.8
3.1
31.1
42.7
Minor BPS
39.7
-0.8
2.5
50.42
41.6

Associated Gene:

Gene:
SPTB
Ensembl Gene ID:
ENSAPLG00000015736
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016431
34238106 - 34252019
13914
ENSAPLT00000043960
34241335 - 34255348
14014
ENSAPLT00000042689
34238106 - 34252019
13914
ENSAPLT00000023092
34236896 - 34252019
15124
ENSAPLT00000022746
34238106 - 34252019
13914