About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34242833_34242923_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34242833 - 34242923
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TCGTTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAT
U12 Branch Point Sequence:
TCTCCGCTCATC
Flanking Amino Acid:
TRQIQTQEKPRDVSSVELLM
Intron Amino Acid Position:
1928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
67.4
0.43
1.2
69
38.9
Major PPT
70.9
0.47
0.9
61.9
40
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
40.9
-0.7
2.5
55.96
42.9

Associated Gene:

Gene:
SPTB
Ensembl Gene ID:
ENSAPLG00000015736
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016431
34238106 - 34252019
13914
ENSAPLT00000043960
34241335 - 34255348
14014
ENSAPLT00000042689
34238106 - 34252019
13914
ENSAPLT00000023092
34236896 - 34252019
15124
ENSAPLT00000022746
34238106 - 34252019
13914