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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34243837_34243929_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
34243837 - 34243929
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CGGGGCCGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACGAAC
U12 Branch Point Sequence:
GGGTACGAACCG
Flanking Amino Acid:
QQLLSAGHPEGEQIIRLQGQ
Intron Amino Acid Position:
1653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
51.9
0.05
1.3
61.6
34.1
Major PPT
50.8
0.02
1
42.3
38.5
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
34.6
-1.3
2.3
37.35
44.7

Associated Gene:

Gene:
SPTB
Ensembl Gene ID:
ENSAPLG00000015736
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022746
34238106 - 34252019
13914
ENSAPLT00000016431
34238106 - 34252019
13914
ENSAPLT00000043960
34241335 - 34255348
14014
ENSAPLT00000042689
34238106 - 34252019
13914
ENSAPLT00000023092
34236896 - 34252019
15124