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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34245195_34245279_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34245195 - 34245279
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAGT
5'SS Class:
major
3'SS Sequence:
TCTCCCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGGGTCCTGACG
Flanking Amino Acid:
SANLMLKRLTRLEEQVGARQ
Intron Amino Acid Position:
1421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
69.1
43.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
79.2
0.66
0.7
69.9
31
Minor 5ss
36.1
-1.6
3
49.5
46.5
Minor BPS
46.5
-0.4
1.8
51.27
43.4

Associated Gene:

Gene:
SPTB
Ensembl Gene ID:
ENSAPLG00000015736
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042689
34238106 - 34252019
13914
ENSAPLT00000023092
34236896 - 34252019
15124
ENSAPLT00000022746
34238106 - 34252019
13914
ENSAPLT00000016431
34238106 - 34252019
13914
ENSAPLT00000043960
34241335 - 34255348
14014