Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34249560_34250075_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34249560 - 34250075

Intron Length:

516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTACGGGGA

5'SS Class:

major

3'SS Sequence:

TGCCTTTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCCCAT

U12 Branch Point Sequence:

TGGGTCCCACCC

Flanking Amino Acid:

EGRLVCDINRAWEQLERAEH

Intron Amino Acid Position:

393

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.1

0.45

1.1

55.1

44.1

Major BPS

50.9

0.02

1.3

60.4

37.5

Major PPT

74.1

0.54

68.4

42.1

Minor 5ss

27.1

-2.6

3.6

43.5

Minor BPS

39.2

-0.8

47.3

42.1

Associated Gene:

Gene:

SPTB

Ensembl Gene ID:

ENSAPLG00000015736

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022746

34238106 - 34252019

13914

ENSAPLT00000016431

34238106 - 34252019

13914

ENSAPLT00000043960

34241335 - 34255348

14014

ENSAPLT00000042689

34238106 - 34252019

13914

ENSAPLT00000023092

34236896 - 34252019

15124