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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34251055_34251132_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34251055 - 34251132
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
GTCCCCATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
ATGCACAGAATC
Flanking Amino Acid:
LLLWCQMKTAGYPHVNITNF
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
76.2
39.9
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
73.2
0.52
0.9
66
34.4
Minor 5ss
36.8
-1.5
3.6
48.8
47.3
Minor BPS
44
-0.4
1.8
53.67
37.3

Associated Gene:

Gene:
SPTB
Ensembl Gene ID:
ENSAPLG00000015736
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023092
34236896 - 34252019
15124
ENSAPLT00000022746
34238106 - 34252019
13914
ENSAPLT00000016431
34238106 - 34252019
13914
ENSAPLT00000043960
34241335 - 34255348
14014
ENSAPLT00000042689
34238106 - 34252019
13914