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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34251225_34251318_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34251225 - 34251318
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTGG
5'SS Class:
major
3'SS Sequence:
TTCTGTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTCCTCTGATA
Flanking Amino Acid:
LIWTIILRFQIQDVIKEMKE
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.7
45
Major BPS
79
0.72
1
69
38.9
Major PPT
79.4
0.66
0.8
77.2
31.6
Minor 5ss
36.4
-1.5
3.2
46.4
49
Minor BPS
51.6
0.04
1.6
65.28
34.6

Associated Gene:

Gene:
SPTB
Ensembl Gene ID:
ENSAPLG00000015736
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023092
34236896 - 34252019
15124
ENSAPLT00000022746
34238106 - 34252019
13914
ENSAPLT00000016431
34238106 - 34252019
13914
ENSAPLT00000043960
34241335 - 34255348
14014
ENSAPLT00000042689
34238106 - 34252019
13914