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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34284833_34285438_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34284833 - 34285438
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AGCACCGTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.1
0.54
0.8
65.3
36.2
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
51.1
0.01
2.1
62.33
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027546
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013388
34284602 - 34297832
13231
ENSAPLT00000032434
34284602 - 34294838
10237
ENSAPLT00000027648
34284602 - 34297832
13231