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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34285605_34285752_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34285605 - 34285752
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
CGCATCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTCCCTCTGACG
Flanking Amino Acid:
PKGPVVCSTVCGNPYAGLVS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
0.9
61.3
37.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
65.1
0.34
0.9
57.1
33.4
Minor 5ss
25.4
-2.8
3.1
27.6
37.3
Minor BPS
48
-0.3
1.7
53.6
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027546
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013388
34284602 - 34297832
13231
ENSAPLT00000032434
34284602 - 34294838
10237
ENSAPLT00000027648
34284602 - 34297832
13231