Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34285916_34288076_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34285916 - 34288076

Intron Length:

2161

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGTCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

TGATGCTTACGG

Flanking Amino Acid:

LEATALDMGKPSFEAYFTEI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.8

71.2

34.5

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

74.2

0.54

0.9

65.4

41.1

Minor 5ss

24.3

-3

3.1

29.7

43.1

Minor BPS

44.8

-0.5

2.3

52.58

47.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013388

34284602 - 34297832

13231

ENSAPLT00000032434

34284602 - 34294838

10237

ENSAPLT00000027648

34284602 - 34297832

13231