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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34288418_34288547_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34288418 - 34288547
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAC
U12 Branch Point Sequence:
CGGCCCTGATGT
Flanking Amino Acid:
LVPLIGAIAAGNCVVVKPSE
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.8
45.3
Major BPS
66.1
0.4
1.2
69.1
37.9
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
29.4
-2.4
3.4
39.3
46
Minor BPS
43.1
-0.4
2
54.92
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027546
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013388
34284602 - 34297832
13231
ENSAPLT00000032434
34284602 - 34294838
10237
ENSAPLT00000027648
34284602 - 34297832
13231