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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34289475_34295613_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34289475 - 34295613
Intron Length:
6139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGGTG
5'SS Class:
major
3'SS Sequence:
TCTTCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGGCAT
U12 Branch Point Sequence:
TCTTCCTCCACA
Flanking Amino Acid:
GQTDEKERYIAPTVLVDVQP
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
64.2
41.9
Major BPS
43
-0.4
1.5
46.5
47
Major PPT
81.6
0.71
0.7
76.2
26
Minor 5ss
27.9
-2.5
3.6
38.1
46.8
Minor BPS
61.5
0.36
2
75.44
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027546
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013388
34284602 - 34297832
13231