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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34293378_34293933_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34293378 - 34293933
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACGAT
U12 Branch Point Sequence:
GTGCCGGTGACG
Flanking Amino Acid:
LEALDLDMRKPPFEAEFSEV
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
48.7
-0
1.4
46.5
46.6
Major PPT
70.8
0.47
0.9
61.4
40.1
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
40.6
-0.8
2.6
48.55
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022702
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034265
34292340 - 34295408
3069