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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34294045_34294164_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34294045 - 34294164
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
GGGTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCCTCCTGATGC
Flanking Amino Acid:
MKDKQVDKNLATQLDTAFIR
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
60.5
44.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
62.5
0.28
1
54.5
41.4
Minor 5ss
28.8
-2.4
3.5
34.5
43.8
Minor BPS
47.6
-0.2
2
58.6
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022702
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034265
34292340 - 34295408
3069