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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34296056_34297230_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34296056 - 34297230
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
GGTGCCATCACA
Flanking Amino Acid:
TLTSLPFGGIGSSGLGKYHG
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
68
42.9
Major BPS
59.7
0.24
1
67
29.8
Major PPT
75.1
0.56
1
68.6
42
Minor 5ss
34.7
-1.7
2.8
39.7
39.7
Minor BPS
47.6
-0.1
2.1
61.94
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027546
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013388
34284602 - 34297832
13231