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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34304490_34304591_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34304490 - 34304591
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GTCTCCCCAACG
Flanking Amino Acid:
EACPVDAIVEGPNFEFSTET
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
64.3
0.32
0.9
58.4
30.3
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
51.2
-0.1
2
61.5
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001750
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001743
34304427 - 34304723
297