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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34309683_34309753_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34309683 - 34309753
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGACCC
5'SS Class:
major
3'SS Sequence:
GCTCTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CTGCGCTGACCC
Flanking Amino Acid:
VATMANRSSWSSDYLATHPS
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
59.5
39.8
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
68.7
0.42
0.9
61.5
35
Minor 5ss
26.4
-2.7
3.1
33.7
41.8
Minor BPS
43
-0.5
2.1
52.22
45

Associated Gene:

Gene:
TCIRG1
Ensembl Gene ID:
ENSAPLG00000013129
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026628
34305664 - 34311596
5933
ENSAPLT00000013685
34305664 - 34311596
5933