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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34312093_34312172_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34312093 - 34312172
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CTGATCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
ACCCCCTGACCC
Flanking Amino Acid:
MAVTAYQNHRITQLKIASNP
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.7
45
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
73.4
0.53
0.9
66.2
35.7
Minor 5ss
37.4
-1.4
3
38.2
46.7
Minor BPS
48
-0.1
1.8
54.95
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037652
34310973 - 34313737
2765