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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34312329_34312418_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34312329 - 34312418
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGGACG
5'SS Class:
major
3'SS Sequence:
TGTCCCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
TTGTCCCCCACC
Flanking Amino Acid:
TNNLLDDNGHIILNSMHRYQ
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
63.1
43
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
68.3
0.41
0.9
60
36.7
Minor 5ss
28.5
-2.5
3
31.3
35.3
Minor BPS
47.8
-0.1
2.3
67.41
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037652
34310973 - 34313737
2765