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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34312771_34312842_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34312771 - 34312842
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCGCT
5'SS Class:
major
3'SS Sequence:
CCCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
GGCACCCCCACG
Flanking Amino Acid:
GTEMIVTKAGRRMFPTFQVK
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.8
39.5
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
74.5
0.55
0.7
68.7
25
Minor 5ss
37.6
-1.4
3.6
56.2
48.2
Minor BPS
37.9
-1.1
2.1
38.97
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037652
34310973 - 34313737
2765