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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34343313_34344628_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34343313 - 34344628
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGAA
5'SS Class:
major
3'SS Sequence:
CTGTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GGGCGCTGAGCG
Flanking Amino Acid:
MPMASSTTVRMGIHGLAKL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.5
35.9
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
69
0.43
0.9
62.1
34.8
Minor 5ss
22
-3.2
3.4
28.1
44
Minor BPS
39.8
-0.9
2
39.67
43.2

Associated Gene:

Gene:
FEN1
Ensembl Gene ID:
ENSAPLG00000001725
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001718
34342898 - 34346552
3655