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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34343370_34343480_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34343370 - 34343480
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCGGGGCCT
5'SS Class:
weak_major
3'SS Sequence:
CCTGCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGGGAT
U12 Branch Point Sequence:
ATCCCCGGAGCC
Flanking Amino Acid:
MGPGRRELEAMSRYTS
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.3
55
36.1
Major BPS
41.6
-0.5
1.5
32.2
43.7
Major PPT
68.8
0.42
0.8
61.6
29
Minor 5ss
17.5
-3.8
4
26.3
37.7
Minor BPS
42.7
-0.5
2.2
55.28
42.6

Associated Gene:

Gene:
TMEM258
Ensembl Gene ID:
ENSAPLG00000006035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006250
34343030 - 34343498
469