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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34400484_34402469_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34400484 - 34402469
Intron Length:
1986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTTAC
5'SS Class:
major
3'SS Sequence:
TCCTACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCCTACATT
Flanking Amino Acid:
GPGVPVALCPRASQNFDKTQ
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
69.9
37.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.5
0.62
0.9
73.8
35.2
Minor 5ss
39.9
-1.1
3
52.6
44.7
Minor BPS
63.9
0.52
2.1
87.41
38.9

Associated Gene:

Gene:
MYRF
Ensembl Gene ID:
ENSAPLG00000006054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006311
34393720 - 34454570
60851