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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34499484_34500090_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34499484 - 34500090
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAA
U12 Branch Point Sequence:
AGCACCTGACTC
Flanking Amino Acid:
NDITAKSVTLGMVVCNWVVI
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
56.7
0.17
1.2
49.6
37.6
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
46
-0.3
1.7
51.16
39.7

Associated Gene:

Gene:
DAGLA
Ensembl Gene ID:
ENSAPLG00000006415
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037489
34472582 - 34515092
42511