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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34500193_34502588_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34500193 - 34502588
Intron Length:
2396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGGC
5'SS Class:
major
3'SS Sequence:
CCTTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTACTATTCATT
Flanking Amino Acid:
SMQYVLYVRLAILVIEFVYA
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.2
40.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.6
0.8
0.8
83.6
31.4
Minor 5ss
30.3
-2.3
3.3
33.5
42
Minor BPS
45.5
-0.2
1.9
62.73
41.7

Associated Gene:

Gene:
DAGLA
Ensembl Gene ID:
ENSAPLG00000006415
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037489
34472582 - 34515092
42511