About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34502801_34503345_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
34502801 - 34503345

Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTG|GTAAGTGAG

5'SS Class:
strong_major

3'SS Sequence:
TTGTGACTGGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTGTGAC

U12 Branch Point Sequence:
TGGTTTGTGACT

Flanking Amino Acid:
AVFLFLLHTTWFVILSVVLF

Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
87
0.87
0.9
74.1
36.5

Major BPS
71.3
0.53
1.2
63.1
44.5

Major PPT
67.6
0.4
1.1
62.7
43.3

Minor 5ss
32.2
-2
3.1
37
41.8

Minor BPS
49.5
0.05
2
70.47
41.3

Associated Gene:

Gene:
DAGLA

Ensembl Gene ID:

Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

34472582 - 34515092
42511

34473582 - 34503484
29903