About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34503485_34514504_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34503485 - 34514504
Intron Length:
11020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTGTCTTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
70.9
0.74
1.2
79.17
37.6

Associated Gene:

Gene:
DAGLA
Ensembl Gene ID:
ENSAPLG00000006415
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037489
34472582 - 34515092
42511