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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34533905_34534295_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34533905 - 34534295
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
CCCCCTGCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
GCGTCCGCCACT
Flanking Amino Acid:
VNSLTSEMLMLSPGSEDDEG
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
63.5
36.3
Major BPS
61.4
0.28
1
53
33.7
Major PPT
66.2
0.36
0.8
59.3
29.9
Minor 5ss
27.3
-2.6
3.2
31.8
37.6
Minor BPS
42.5
-0.5
2.5
60.43
48.7

Associated Gene:

Gene:
SYT7
Ensembl Gene ID:
ENSAPLG00000006747
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007017
34529713 - 34536027
6315