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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34543597_34543674_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34543597 - 34543674
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTTAC
U12 Branch Point Sequence:
CAGCCCTTACCC
Flanking Amino Acid:
PPVDPEPRSTSTARAQPHGA
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
56.6
0.16
1.1
48.9
36.2
Major PPT
77.8
0.62
0.9
71.5
38.3
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
55.7
0.16
1.7
60.84
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021531
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043461
34542365 - 34546350
3986