Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34544378_34544533_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34544378 - 34544533

Intron Length:

156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TCCCACCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

TATTTCCCACCC

Flanking Amino Acid:

GEHGADPAQTDVLQRTTIGA

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

79.7

36.4

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

68.3

0.41

0.8

60.8

Minor 5ss

41.6

-0.9

3.6

64.2

47.3

Minor BPS

46.7

-0.2

2.1

64.32

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021531

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043461

34542365 - 34546350

3986