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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34544728_34544810_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34544728 - 34544810
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGCGTACC
5'SS Class:
major
3'SS Sequence:
ACTCTTGCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCGTCCTGAACT
Flanking Amino Acid:
GLIRPRSAAGGPFWDTTMAE
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
66
39.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
71.1
0.48
0.9
64.6
35.9
Minor 5ss
30
-2.3
2.7
29.2
35.7
Minor BPS
68.2
0.65
1.5
76.53
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021531
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043461
34542365 - 34546350
3986