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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34545833_34545965_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34545833 - 34545965
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTCTTCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.5
0.64
0.9
73
36.8
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
61.9
0.45
1.6
74.56
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021531
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043461
34542365 - 34546350
3986