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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34546076_34546233_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34546076 - 34546233
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
CTCCCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CCACACTCATCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
80.9
0.69
0.7
72.2
32.4
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
41.9
-0.6
1.9
46.03
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021531
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043461
34542365 - 34546350
3986