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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34555049_34555155_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34555049 - 34555155
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCGC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
GTGACCAAAAAA
Flanking Amino Acid:
YSTGASSSSSRKRHRSRERS
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
51.7
45.2
Major BPS
54
0.1
1
59.7
32.6
Major PPT
86.9
0.83
0.7
80.6
31.5
Minor 5ss
30.1
-2.3
3.4
42.5
44.3
Minor BPS
44.4
-0.4
2
55.44
42.7

Associated Gene:

Gene:
CPSF7
Ensembl Gene ID:
ENSAPLG00000006963
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007223
34549889 - 34555747
5859